RnoEX0016715 @ rn6
Exon Skipping
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112269544-112275534:+
Coord C1 exon
chr3:112269544-112269580
Coord A exon
chr3:112275070-112275147
Coord C2 exon
chr3:112275477-112275534
Length
78 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTGTGTCCCCATAGCCA
3' ss Score
11.03
5' ss Seq
GACGTATGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GGAAGCTGAGAATACAATCTCTGTGGACCGGCCAGTG
Seq A exon
CCACGGCCTGGCCACACAGACCAGGAGAGTGAGGAGCAGCAGCAATTCCGGAACATCTTCAGGCAGATTGCAGGCGAC
Seq C2 exon
GACATGGAGATCTGTGCGGATGAACTCAAGAATGTCCTTAATACGGTGGTGAACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.731 C2=0.120
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
PF138331=EF-hand_8=PU(0.1=0.0)
C2:
PF138331=EF-hand_8=PU(50.0=29.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTGAGAATACAATCTCTGTGG
R:
GTTTGTTCACCACCGTATTAAGGAC
Band lengths:
95-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]