HsaINT0027471 @ hg38
Intron Retention
Gene
ENSG00000092529 | CAPN3
Description
calpain 3 [Source:HGNC Symbol;Acc:HGNC:1480]
Coordinates
chr15:42410884-42411345:+
Coord C1 exon
chr15:42410884-42411000
Coord A exon
chr15:42411001-42411286
Coord C2 exon
chr15:42411287-42411345
Length
286 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
GCCTGTGCATTCTTTCACAGGAG
3' ss Score
9.68
Exon sequences
Seq C1 exon
GATTCCACCTCAACAACCAGCTCTATGACATCATTACCATGCGGTACGCAGACAAACACATGAACATCGACTTTGACAGTTTCATCTGCTGCTTCGTTAGGCTGGAGGGCATGTTCA
Seq A exon
GTAAGTGGGAGAGGGGGGCTGCCCTCTGCTCTCTTGCAGGGGCAGTTGTGGCAACAGGCATCTCACCTGATAATCTCCAGTCTGCTCCATCCAGGCTGAACAAGGGCCAATGACCTCTTTAGGCCCAGAATGGGATGGCAAAGGGAGGGTTACTGGTGATTCTCTGCCTGCACATCTTTGTGCTGATGAGGGACAGCACTGGGCACATGGTCCTCTGAGGGGAAGTTACAGTAGTAGAGGCGGAGTGCGCCTGTAACTGGCCTCTGGCCTGTGCATTCTTTCACAG
Seq C2 exon
GAGCTTTTCATGCATTTGACAAGGATGGAGATGGTATCATCAAGCTCAACGTTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529:ENST00000318023:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(41.9=100)
A:
NA
C2:
PF0003627=EF-hand_1=FE(76.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCTCAACAACCAGCTCT
R:
TCCAGAACGTTGAGCTTGATGA
Band lengths:
172-458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development