DreINT0041191 @ danRer10
Intron Retention
Gene
ENSDARG00000041864 | capn3a
Description
calpain 3a, (p94) [Source:ZFIN;Acc:ZDB-GENE-040912-97]
Coordinates
chr17:45355684-45358724:+
Coord C1 exon
chr17:45355684-45355800
Coord A exon
chr17:45355801-45358665
Coord C2 exon
chr17:45358666-45358724
Length
2865 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
CAAACCTGTTTTTCTTATAGGAG
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGTTCCGTCTGAACAACCAGCTGTATGACATCATCACCATGCGCTACGCCAACGAAAGCATGAATGTCGACTTTGAGAGTTTCATCAGCTGCCTTGTGCGACTGGAGGGGATGTTCA
Seq A exon
GTAAGTTGGCCAATATATTGTACTATGATTACACTAAAAGACTTTATTCTGATTATTTAAATCTTTCAGGACTTTTTTTTCTACTGTTTTTGTCTTCAAACTGCTCTTGTGTGCAGGATAAGTATCTTATGCCAGTGTTTCTCAATCACGTTCCTGGAGGAGCACCAGCACTGCATGCTTTGGATGTCTCCTTTGTCAGTCACACCCATTACAGTTCCTTCAGTCTCTGCTAATGAGCTGATGATCTGATTCAGGTGTGTTTGGTTAAGGAGACACTGAAAATGTGCAGAGCTGGTGGTCCTCCAGGAACATGGTTGAGTAACACTGTCTTATCCATCTCATCCCATCGTTAATTTCGAAACATTTTAAAGCTAGTAGCAGGCTTGAGTCTTAGATATCAGGCTAATGTCGTTATTACTATAGATATGAATGTATTTGTGATTAAAGATAGCGAGAAAGTAAAGGAAGAGAGAATTATGTGTCTGTAAGGGGAACTATGTGCATCTCTTAGTGTCCAGCATTAGCACCGCAACTAATAGTAAAAGTATGTTTTTAAATTTAAGAAAACGTTACAGAGAAAAAAAAATAACGGACAATTAGCTGGCAGCTAGCTATCTGCAACTCTTACATGGTCGCCCACTGAAGTTAAACAGGGCTGCGCCCGCTCAGTAGCTGGATGGAAAACCACACAGGAAAGCTAGGTTGCTGCCACTAGTGGTGTTAGTGAGGCCAGCAGGGAGTGCTCAACCTGCGGTCTGTATGGGTCTTAACACCCCAGTATAAAGAAGGGGACTCTATACTGCTCAGTGAGTGCAGTCTTTCAGATGAGACGTTAAAAACTGAGGTTCTGACTCTTTGTGGTCGTTAAAAATCCTCTGTCCACCATAGCCTCCTAACCATCCTCATATTATAATTGGCTTCATCACTCTTGTCTCCTCTCCACCAATCAGCTGGTGTGTGGTGTGCAAAATGGCTGCCGTGGCGTCATCCAGGTGGTTGCTGCACACTGGTGGTGGATGAGGAGATCCCCCCCCACCCCCCATTGTGTAAAGCACTTTGAGTGTCTAGAGAAGCGCTATCTAAATGTAAGGAATTATAATTATTATTAATATATTGTAGCGACGCAGTGGCGCAGTAGGTAGTGCTGTCGCCTCACAGCAAGAAGGTCTCTGGTTTGAGCCTCGGCTGAGTCAGTTTCTGTGTGGAGTTTGCATGTTCGTCCGGGGTTCTCGTGGGTTTCCTCTGGGGGCTCCAGTTTCCCCCACAGTCCAAAGACGTGATACAGGTGAATTGGGTAGACTAAATTGTCCGTAGTCTATGAGTGTGAATTAGTGTGTGTGTGGATGTTTCCCAGTGATGGGTTGCGGCTGGAAGGGCATCCGCTGTGTAAAACATGTGCTGGATAAGTTGGTGGGTCTAAGAGTGGAGAACATGAGTCTGATTCCAGCGACGCTCCAGGGACAGACGAGTCTTCGCTGAGGCCATCTTCCAGCCTAAACCACGATGAATGAAGTTCTGCACAAGACTTTTTGGCCAGCGGAGAAATTAAAATGGTCGTGCCAAACTGAGTCTGGTTCTCTCAAGGTTTTTTTTCTTCACTCCCATCAGGTGAAGTTTTTTTTCCCTCTCCGCTGTCGCCACTGCCTCGCATGGTTCAGGATTAGTATAGATACGCATCGATGAATTGGCTCTTCAGTGTTAGAACTCTCAGTAATGATTCAATCACACTGAACTGAGCTAAACTCAACTGAACTGAACTTAAACACTAAAACCTGAACCACACTGTTCCAGTTACTATGACCATTTATGTGAAGCTGCTTTGACACAATCTACATTGTAAAAGCGCTATACAAATAAAGCTGAATTGAATTGAATTGAATTGGTTCATTCCGCTGTGGCGACCCCGGATTAATAAACGGATTATCTAAGCCAAAAAGAAAATATAAATTAATGAATATTAATTATGTTCCCATAATTTAGGTGCGCATTAAACTGCTAAACTGAAATGTCACATAAAACATTTACGAAACGGCACCGTTTCCATCCAATGAGTTAGAGGAAAGAGGACCCCACCCCCCATCCCCCACCAATAGTTACTAAATAGTAACTCGTGGGCCCTTAAAATCATCCTAACTTTACCTGTCAGGCGGCTCCTCTGGGAGAAGCCACTGTTGGTTGTTTTTATTTATGTAATTGACGAAGATGAAGACTAATGGCAATGAACGCAGTTATAAATGGCTTTTGATGTAAAATCACGATGATGATAGACTCTGGCTGAGGCGTTTTAGAATGGCCAAAACAACATTTCACAAATTGTGCAACAAGGTTTGTCCACTAATGGTTGGTTTGTTCATTAATGCCGTCCTATCTGAAAGAATACTTTTCTGTTATCACTTGAAACGTTAAAACAAAATCACATGACTTTTTTCAATTCAACTGGTAAATGTGTGTGTGTTTTTTATGTTAATCTTACTCAGTTGTGCATGCTCATTTTTACCAATGATGCAGATTTTAGTGTTTCCCTTAAGCTTTATTATGTGATAGTCAAAATAGGTGGATAAATATGGCTTTTGACAGCAGACTAATGCAGTTATTCAGCAATTCAGAAAGTGACACTAGTGGCCATTAGGAAAATTACAGCTAGCTTCTCATTGCTTGTGCTCATGTTTATACTTGTAAACCATACAAGAGATTTAAAATTTTTGACCATTTTGCCTTTTTTATGATAGGACAGAAAAGGAAATGACAAAAAATGAAGTGAGGGAGGAAGAGGGAAGGGGATAGGATTAAGAAAGGTCCATGACAGCTAATTTGGTATTTGTGTATATTAAAATCACACAGTGTTCAAACCTGTTTTTCTTATAG
Seq C2 exon
GAGCATTCCAGGCCTTTGACCAATGTGGAGATGGCAGCATCAGGCTCAGTGTACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041864:ENSDART00000148667:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(40.4=100),PF144351=SUKH-4=PU(56.5=89.7)
A:
NA
C2:
PF134991=EF-hand_7=FE(20.2=100),PF144351=SUKH-4=FE(30.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]