GgaINT0054932 @ galGal3
Intron Retention
Gene
ENSGALG00000009050 | CAPN3
Description
NA
Coordinates
chr5:27841390-27841924:+
Coord C1 exon
chr5:27841390-27841506
Coord A exon
chr5:27841507-27841865
Coord C2 exon
chr5:27841866-27841924
Length
359 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TTTTTCTGTCATTGATTTAGGGG
3' ss Score
9.93
Exon sequences
Seq C1 exon
GGTTTCGGCTGAACAACCAGCTCTACGACATCATCACGATGCGCTATGCTGACAAGAACATGAACATCGACTTTGACAGCTTCATCTGCTGCTTCGTGAGACTGGATGCTATGTTCA
Seq A exon
GTGAGTGGCTGCCCTCATTTTACAGGCTTGTCCCCTTCCCTGCCCCAAAATACACTCCGAAATTTAAAGGAAAGTTTATTATATGTAGCACTATTGCCTACGTGAAGTTTTAATAATGTAAGATATATACTAAGTTATGACAGCCATCCCATACAAACACAAAAGATAATAATCCATTACATATCTCCATGCATTAGCTATGAAAAAGCATAGCAGAAATACTTGCTGACCAAAAAAGTAAACATGCACAGAAGTTTGGATAACACAGTGGGAACATGATTTGGTTTGCTGCATGGGATCATCTTTACACTCTGCTTGCACAATAATTTATCCCATGTATTTTTCTGTCATTGATTTAG
Seq C2 exon
GGGCATTCCATGCCTTTGATAAAGATGGAGATGGAATCATAAAGCTCAACGTCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050:ENSGALT00000032636:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=PU(11.5=7.5)
A:
NA
C2:
PF134051=EF-hand_6=FE(73.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]