RnoINT0029070 @ rn6
Intron Retention
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112276890-112277695:+
Coord C1 exon
chr3:112276890-112277006
Coord A exon
chr3:112277007-112277636
Coord C2 exon
chr3:112277637-112277695
Length
630 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
CTGTATGCTCTCTCACACAGGAG
3' ss Score
9.27
Exon sequences
Seq C1 exon
GCTTCCATCTCAACAGCCAACTCTATGACATCATCACCATGCGCTACGCAGACAAACACATGAACATCGACTTTGACAGCTTCATCTGCTGCTTCGTCAGGCTGGAAGGGATGTTCA
Seq A exon
GTAAGTGAGGAGCCACCCCTCAGACCTCTCAAGCCCCTCCAGGCTCCTTCCCCATGGTACAGCCACAATAGTAAGCGCTCAGTCTTGACAGTTGCTCACTCTTCCAAAGGGGCTGCACATCAGCCATTACTCTCTGAAGGCCAAGAGGATGGCAAAGGGGAGACAAAAGGTCTGAGGGAGAGAGAGATGCTGGTTATGCTCTGCACTGATTGGTGTGAGGACAGCACTCAGCACAGACTTCTTAAATTACAGATCCAAGCGCTCAGATGATGCTCACTTGTGACCCCAGCAGTTAGGTAGGCGAGACAGGAGGGTTATGACCTCAAGGCCAGCTTGGGCTACTTGGAGAGACCTTGTTTCAATAACAAAAGAAGGGCTGGCAAGATGGCTCAGCTGCATGGTTCTGGCATCTGAGTTTAATGGCTGAAATTCATGAGGTGGAGAGAACCAATCTCAGAGTTGCCCCTCTGACCTCTCTACATGTTCTGTGCTCACACGCATACAGTAATAAATTCTTCAAAAAGCAAACACAAGTAAACTAAGCGAAAACCCTAAAAAAAAGGAGTGGGAGGTGACAAAAGAAAATAGAGGAGTCTGCAACTCGTGGTTGCTGTATGCTCTCTCACACAG
Seq C2 exon
GAGCTTTTCACGCATTTGACAAGGATGGAGATGGCATCATCAAACTGAACGTACTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609:ENSRNOT00000011761:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]