BtaEX6052760 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008868 | CAPN3
Description
Bos taurus calpain 3, (p94) (CAPN3), mRNA. [Source:RefSeq mRNA;Acc:NM_174260]
Coordinates
chr10:37883384-37884170:+
Coord C1 exon
chr10:37883384-37883448
Coord A exon
chr10:37883934-37884002
Coord C2 exon
chr10:37884092-37884170
Length
69 bp
Sequences
Splice sites
3' ss Seq
CCCTGACCTCCTTCCTCCAGACA
3' ss Score
9.54
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
ATAAGGACCTGAAGACACAAGGCTTCACGCTGGAGTCCTGCCGTAGCATGATTGCTCTCATGGAC
Seq A exon
ACAGATGGCTCTGGGAGACTGAACCTGCAAGAGTTTCATCACCTCTGGAAGAAGATTAAGACGTGGCAG
Seq C2 exon
AAAATTTTCAAACACTATGACACAGACCAATCTGGCACCATCAACAGCTACGAGATGCGCAATGCAGTCAAAGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008868-'33-32,'33-30,34-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(5.3=21.7)
C2:
PF134991=EF-hand_7=FE(27.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGGACCTGAAGACACAAGGC
R:
TGCATCTTTGACTGCATTGCG
Band lengths:
143-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]