MmuEX6104180 @ mm9
Exon Skipping
Gene
ENSMUSG00000079110 | Capn3
Description
calpain 3 [Source:MGI Symbol;Acc:MGI:107437]
Coordinates
chr2:120328265-120328947:+
Coord C1 exon
chr2:120328265-120328329
Coord A exon
chr2:120328712-120328780
Coord C2 exon
chr2:120328869-120328947
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCCTTACATCTATCCTCTAGACA
3' ss Score
7.37
5' ss Seq
CAGGTGCGA
5' ss Score
7.75
Exon sequences
Seq C1 exon
ACAAGGACCTGAAGACACAAGGGTTCACGCTGGAGTCCTGCAGAAGCATGATAGCTCTCATGGAT
Seq A exon
ACAGATGGCTCTGGAAGACTGAATCTTCAAGAGTTCCATCACCTCTGGAAAAAGATCAAGGCCTGGCAG
Seq C2 exon
AAAATCTTCAAGCACTATGACACAGACCATTCCGGTACCATCAATAGCTATGAGATGCGAAATGCAGTCAATGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079110-'34-36,'34-35,36-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(35.6=100),PF0175117=Toprim=FE(21.0=100)
A:
PF138331=EF-hand_8=PD(30.5=78.3),PF0175117=Toprim=FE(22.0=100),PF134991=EF-hand_7=PU(3.2=13.0)
C2:
PF0175117=Toprim=FE(26.0=100),PF134991=EF-hand_7=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGACCTGAAGACACAAGG
R:
TGCATCATTGACTGCATTTCGC
Band lengths:
143-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: