RnoEX6018555 @ rn6
Exon Skipping
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112275619-112276689:+
Coord C1 exon
chr3:112275619-112275683
Coord A exon
chr3:112276453-112276521
Coord C2 exon
chr3:112276611-112276689
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCCTGACATCTATCCTCCAGACA
3' ss Score
6.78
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ACAAGGACCTGAAGACACAAGGGTTCACTCTGGAGTCCTGCAGAAGCATGATAGCTCTCATGGAT
Seq A exon
ACAGATGGCTCTGGGAGACTGAATCTTCAAGAGTTCCATCACCTCTGGAAAAAGATCAAGGCCTGGCAG
Seq C2 exon
AAAATCTTCAAACACTATGACACTGACCATTCTGGTACCATCAATAGCTATGAGATGCGAAATGCAGTCAATGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609-'26-27,'26-25,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
PF138331=EF-hand_8=PD(29.5=78.3),PF0003627=EF-hand_1=PU(6.9=8.7)
C2:
PF0003627=EF-hand_1=PD(86.2=92.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGACCTGAAGACACAAGG
R:
TGCATCATTGACTGCATTTCGC
Band lengths:
143-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]