HsaEX6012758 @ hg19
Exon Skipping
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:16664]
Coordinates
chr2:31400612-31403866:-
Coord C1 exon
chr2:31403802-31403866
Coord A exon
chr2:31401377-31401445
Coord C2 exon
chr2:31400612-31400687
Length
69 bp
Sequences
Splice sites
3' ss Seq
TACCTTAACCTATTAATCAGCTT
3' ss Score
2.02
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTCTGGGGAGCAGACAGCCCTTCTTTAGCCTGGAAGCCTGCCAGGGGATCCTGGCCTTACTGGAC
Seq A exon
CTTAATGCATCAGGTACTATGAGCATCCAGGAATTCAGGGACCTGTGGAAGCAGCTGAAGCTCTCTCAG
Seq C2 exon
AAGGTTTTCCACAAGCAAGACCGTGGGTCAGGATACCTGAACTGGGAGCAGCTGCACGCTGCCATGAGGGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(31.0=40.9)
A:
PF0003627=EF-hand_1=PD(62.1=78.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGGGAGCAGACAGCC
R:
CTCCCTCATGGCAGCGTG
Band lengths:
137-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)