BtaEX6044946 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015865 | CAPN14
Description
Bos taurus calpain 14 (CAPN14), mRNA. [Source:RefSeq mRNA;Acc:NM_001192425]
Coordinates
chr11:68709254-68711806:+
Coord C1 exon
chr11:68709254-68709318
Coord A exon
chr11:68710499-68710567
Coord C2 exon
chr11:68711728-68711806
Length
69 bp
Sequences
Splice sites
3' ss Seq
GACCTTAACCCTGCTATCAGCTT
3' ss Score
3.71
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTCTAGGAAGCAAACAGCCTCTCTTCAGCCTTGAGGCCTGTCAGGGAATCCTGGCCCTGCTGGAT
Seq A exon
CTTAACGCATCCGGCACTGTGAGTATCCAGGAATTCAGGGACCTGTGGAAGCAGCTGATGTTCTATCAG
Seq C2 exon
GAGGTTTTCCACAAGCAAGACACTAACCGGTCAGGATCCCTGAATTGGGCCCAACTGCGGGCTGCCATGAGGGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015865-'16-20,'16-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(31.0=40.9)
A:
PF0003627=EF-hand_1=PD(62.1=78.3),PF134051=EF-hand_6=PU(8.6=13.0)
C2:
PF134051=EF-hand_6=FE(74.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCTCTCTTCAGCCTTGA
R:
CCTCCCTCATGGCAGCCC
Band lengths:
128-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]