GgaINT0083318 @ galGal4
Intron Retention
Gene
ENSGALG00000009069 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr3:7651165-7652358:+
Coord C1 exon
chr3:7651165-7651243
Coord A exon
chr3:7651244-7652241
Coord C2 exon
chr3:7652242-7652358
Length
998 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TTTTTTCCCCTCTCCTGAAGGTA
3' ss Score
9.73
Exon sequences
Seq C1 exon
GAGGTTTTCCAGAAAAGAGACACTAGCAGATCAGGAAAGCTTGACCTGGTAGAACTGCGTGCAGCTGTACAGGAGACAG
Seq A exon
GTGTGTGCCACAGCACATCTTGGTGAAGCTCATCCTCTTCCTCAGAAAGGCTGGGAAAAATTTGAGCAGGAATAAATCTTGACTTGTTGGCAGAACCCAGGAAGAGTGGGAATGATCATAGGCTGCATGGTCTTAGCCATCTCTGCTTCCCTTTATAGCTAGCTAAAAATATCTGAGAAGTATTTTGCTCTGTGGTAGCTTGCTTAATCTTTGCCTTTATCTTTGGCATTATACCGATGACATGTCAGGGACTGAACCTGGAAGTCTGGGACTTGCACAGAGGCAATACCAGTGCCAGGCTTCACTAATACACCATCTTGAGCTTAAAATAGAAATGAAGATCATACACAAAGGGCCAAATACCTGGACCAAGGTCTGTTGTGCTCACCATACTTTGAGTGGGGGTTGGTGCTCAGTCTTTTACCTCCTTTTGCAGTTTTAGAGCTTGAATGTCACTCACCTTCTTGATGTGTGGTTCACCCAGTTCATCTGTGTCAACAAATGCACAGTTTGAAACCCATGCAGACCTCTACTAAAGCAAATTAAAGTACCGGGCCATGAGTAGGAAATACTACTAGCAAATTTCCTGCAAATGCTACTTGACATGCTTTCCTCTGGATTTTCTTTCTCCTTTCCTCTCCTACCGTCTTGTGGAGTATTGCTCTTAAACGCAGCTGCTGTTACTGCCTTCCATTCACTCATGAGTGAATGATGCCCGTTTGTGTTTTATTCCAGCTCTAACAGGGACAGGAGTATAGGTGACCAGCTTTGACCCCCTTTACAGTTTGAAAGAGCTGTCTGCACCTGAGGGGCTGGTTTGGGCTGGTTAGCACTTGATAAACATAGGGGAGGTTTGAAAAAGCAAATGGCTGTGAAAGAGACTGAGATCAATGAGTCGTGTACACCCAGAAGCATACACATTTAGCTGCCCACAACTGGGAGTTGCCCTCCCATAATGTTTTTCATGATTTTATTTTATTTTTTCCCCTCTCCTGAAG
Seq C2 exon
GTATTTCACTCAGCAATGAAGTCTGTAATTTGATGGCGATCAGATATGGTGACCCTGACTTGAAGATCAGCTTTGAGAGCTTCATGTGTTTCATGCTTCGAGTAGAGATCATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009069:ENSGALT00000014761:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTCCAGAAAAGAGACACTAGC
R:
TCCCATGATCTCTACTCGAAGCA
Band lengths:
193-1191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]