BtaEX6044955 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015865 | CAPN14
Description
Bos taurus calpain 14 (CAPN14), mRNA. [Source:RefSeq mRNA;Acc:NM_001192425]
Coordinates
chr11:68690518-68691478:+
Coord C1 exon
chr11:68690518-68690636
Coord A exon
chr11:68690751-68690887
Coord C2 exon
chr11:68691304-68691478
Length
137 bp
Sequences
Splice sites
3' ss Seq
ATGGCCTTCTGTCCTTCCAGTTC
3' ss Score
9.81
5' ss Seq
TAAGTAAGA
5' ss Score
5.17
Exon sequences
Seq C1 exon
GTGACTGCTGGTTCTTGGCGGCTTTGCAAGCTCTGAGTTTGCACCAGGACATTCTGAGTCGCGTTGTTCCCCTAAATCAGAGTTTCACGAAGAAGTATGCTGGCATCTTCCAGTTCTGG
Seq A exon
TTCTGGCACTTTGGAAAGTGGGTTCCGATTGTGGTAGATGACCGACTACCTGTGAATGAAGCTGGCCAGCTGGTCTTTGTCTCTTCTACCTACAAGAACTTGTTCTGGGGAGCTCTTCTGGAAAAGGCCTATGCTAA
Seq C2 exon
GCTCTCTGGCTCCTATGAAGACTTGCAGCGTGGACAGGTGTCTGAAGCCCTTGTGGACTTCACTGGAGGGGTGACAATGACCATCAAGCTGTCAGAAGCCCCTGACAGCCTCTGGGATGTCCTAACCCGAGCCATGTACAGCAGAACCCTGATTGGCTGCCAGACCCACTGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015865-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.3=100)
A:
PF0064816=Peptidase_C2=FE(15.3=100)
C2:
PF0064816=Peptidase_C2=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTCTGAGTTTGCACCAGG
R:
CAGGGTTCTGCTGTACATGGC
Band lengths:
243-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]