GgaEX1012788 @ galGal4
Exon Skipping
Gene
ENSGALG00000009069 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr3:7636299-7638417:+
Coord C1 exon
chr3:7636299-7636417
Coord A exon
chr3:7637016-7637152
Coord C2 exon
chr3:7638245-7638417
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCATTCCTTTCCCCTGACAGTTC
3' ss Score
10.93
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GGAACTGCTGGTTCCTGGCGGCTCTGCAAGCCCTGACATTCCACCAGGACATCTTAGCTGCAGTCGTGCCACAAAACCAGAGCTTTGAGAGGAAATATGCTGGCATTTTCCACTTCCGG
Seq A exon
TTCTGGCACTTTGGTGAATGGGTTGACGTGGTGGTTGATGATCGCCTGCCGGTGAATGAGGCGGGGGAGCTGGTCTTTGTTTCTTCAGTCTATAAGAATGTGTTCTGGGGAGCCCTTTTGGAGAAGGCATATGCTAA
Seq C2 exon
ACTCTATGGCTCCTATGAAGATCTACAGATTGGGCAAGTTTCAGAAGCCTTGGTGGATTTCACAGGTGGTGTTAATATAAGAATCAAGCTTCCAGCAGCTCCTCCTGATCTGTGGGATATCCTGACAAGAGCAACCTACAGCAGATCTCTCATGTGCTGTCAGACACAGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009069_MULTIEX1-2/3=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.0=100)
A:
PF0064816=Peptidase_C2=FE(15.0=100)
C2:
PF0064816=Peptidase_C2=FE(19.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCAAGCCCTGACATTCC
R:
CTGCTGTAGGTTGCTCTTGTCA
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]