MmuEX6104189 @ mm9
Exon Skipping
Gene
ENSMUSG00000079110 | Capn3
Description
calpain 3 [Source:MGI Symbol;Acc:MGI:107437]
Coordinates
chr2:120307846-120311085:+
Coord C1 exon
chr2:120307846-120307964
Coord A exon
chr2:120310227-120310360
Coord C2 exon
chr2:120310917-120311085
Length
134 bp
Sequences
Splice sites
3' ss Seq
GGGCTTCTTTCTTCTTGCAGTTC
3' ss Score
9.55
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGGACTGCTGGTTTCTTGCAGCCATCGCCTGCCTGACCCTGAATGAGCGGCTGCTTTTCCGAGTTATACCCCATGATCAAAGTTTCACTGAAAACTACGCAGGGATCTTCCACTTCCAG
Seq A exon
TTCTGGCGCTATGGAGACTGGGTAGATGTGGTCATTGACGACTGTCTGCCAACATACAACAATCAGCTGGTTTTCACCAAATCCAACCACCGCAATGAGTTCTGGAGTGCTCTCCTTGAGAAGGCTTATGCCAA
Seq C2 exon
GCTCCATGGCTCCTATGAAGCTCTGAAAGGTGGGAATACCACAGAAGCCATGGAGGACTTCACAGGAGGGGTGACAGAGTTTTTTGAGATCAAGGATGCTCCGAGTGACATGTACAAGATTATGAGGAAAGCTATCGAGAGAGGCTCCCTCATGGGCTGCTCCATTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079110-'10-15,'10-14,12-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(19.1=100)
A:
PF0064816=Peptidase_C2=FE(21.6=100)
C2:
PF0064816=Peptidase_C2=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTGACCCTGAATGAGC
R:
GAGGGAGCCTCTCTCGATAGC
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: