GgaEX1012789 @ galGal4
Exon Skipping
Gene
ENSGALG00000009069 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr3:7635301-7639190:+
Coord C1 exon
chr3:7635301-7635370
Coord A exon
chr3:7638245-7638419
Coord C2 exon
chr3:7639125-7639190
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTGATGTCTTTTTTTGCTAGACT
3' ss Score
6.56
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GCTTTGCACAGAACTCCAGTATTTTATGCTGCAAACAGAAAGCAACTTGACCTCTGCCAAGGATTAGTGG
Seq A exon
ACTCTATGGCTCCTATGAAGATCTACAGATTGGGCAAGTTTCAGAAGCCTTGGTGGATTTCACAGGTGGTGTTAATATAAGAATCAAGCTTCCAGCAGCTCCTCCTGATCTGTGGGATATCCTGACAAGAGCAACCTACAGCAGATCTCTCATGTGCTGTCAGACACAGTTAGGG
Seq C2 exon
ACAACAAAGGTCTTGAAGAATGGACTTGTTGCTGGCCATGCTTACACAGTAACTGGTATTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009069_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(7.6=100)
A:
PF0064816=Peptidase_C2=FE(19.3=100)
C2:
PF0064816=Peptidase_C2=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGCACAGAACTCCAGTA
R:
AATACCAGTTACTGTGTAAGCATGGC
Band lengths:
130-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]