GgaEX0013320 @ galGal4
Exon Skipping
Gene
ENSGALG00000009069 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr3:7632672-7636417:+
Coord C1 exon
chr3:7632672-7632905
Coord A exon
chr3:7635301-7635370
Coord C2 exon
chr3:7636299-7636417
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTGGCCATGTGCTTCCCAGGCT
3' ss Score
6.83
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GCCATGCCTCTGTTGCCATGCCTGAAGAAAGAGAAGTCGCCTGGGTCTTTGGGAAAGAATATCTTTCAGAAACACAGCCCACCTGTCCAGCAGAACTACCAAGCCTTGCTGGAGATGTGCTTGAAGAATAAACAGCTGTTCACTGATGAGAGTTTTCCTGCTGACATCAGTTCTATTGGAACAGGAGCAATACTGAAGAAACTCCCCCGAAATGTGCAGTGGAAGAGGCCACAT
Seq A exon
GCTTTGCACAGAACTCCAGTATTTTATGCTGCAAACAGAAAGCAACTTGACCTCTGCCAAGGATTAGTGG
Seq C2 exon
GGAACTGCTGGTTCCTGGCGGCTCTGCAAGCCCTGACATTCCACCAGGACATCTTAGCTGCAGTCGTGCCACAAAACCAGAGCTTTGAGAGGAAATATGCTGGCATTTTCCACTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009069-'0-2,'0-0,1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(10.6=41.0)
A:
PF0064816=Peptidase_C2=FE(7.6=100)
C2:
PF0064816=Peptidase_C2=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACCAAGCCTTGCTGGAGA
R:
GGAATGTCAGGGCTTGCAGAG
Band lengths:
182-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]