GgaINT0083300 @ galGal4
Intron Retention
Gene
ENSGALG00000009069 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr3:7632672-7635370:+
Coord C1 exon
chr3:7632672-7632905
Coord A exon
chr3:7632906-7635300
Coord C2 exon
chr3:7635301-7635370
Length
2395 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TTTGGCCATGTGCTTCCCAGGCT
3' ss Score
6.83
Exon sequences
Seq C1 exon
GCCATGCCTCTGTTGCCATGCCTGAAGAAAGAGAAGTCGCCTGGGTCTTTGGGAAAGAATATCTTTCAGAAACACAGCCCACCTGTCCAGCAGAACTACCAAGCCTTGCTGGAGATGTGCTTGAAGAATAAACAGCTGTTCACTGATGAGAGTTTTCCTGCTGACATCAGTTCTATTGGAACAGGAGCAATACTGAAGAAACTCCCCCGAAATGTGCAGTGGAAGAGGCCACAT
Seq A exon
GTAAGTGATTTGCAGTGAATATTCTCATGTAAGAGAATGATTAGAGTCGATAGGCAGCAAATAGTGATAACATCAGGTGGACTTACTCATAGACTTTGAGTGTGCCATAATGCCTTCAGAAGTGATACTTATTGTAGCAGCTGTCATTTCAGAAGCTTGTGTACATATAGTTTCATAATTGCCTTTAAAGCATTTATTGCCAAAAAATCATAACCAACTTTATTCAGTTTATATCCAATAACACTTAGAGCGGGCAGGGAAAGCAAATGAAGGGGGTGAGTGGAAGCTGGTGCCCTTGGAACAAGTAGCACGCTGGCAGATGTGATGATTCTGCAGGGATTCTCTGATGACAGTTCTTGTGGTGACAGTCTCTTACCCCAAAATTGAGAATCTTAACAATTTAGAAGATTTCTGAATTTTCAGACCATTCTTAGCCTTTGACTCCAATCCCATGGACCACATATTGTTGTGATGCTGAAGGCTGTTACTTTCCTAGGCAGTGGCAGGTGCCTTATCCTTTTGCTGATCTAGTTTTTGTTTGTTTGTTTTTTCCCTTTCTTAACTGTTTAGTCTATTCTGTACTGTGTTTGTGCACTGTTTCCCAGCTCTCAAGGTTAAGCTTCTGCCATGACCAGTAACTGATCATCAGTGGGTTGCTTTCAGTTCTGAAGCCTCTGTATTTTACTTGTGCTCTTATTTCCAAGGCCCTTGCCGCTTGCTACCCCACACTTACTGGAATGAACAAGACCCCTGAGATCAAGCTGTGATCCCAGAGCAAGTTCCCATTACAAAGTGGTAGCGAGTCTTGCTGGCCAAGACAGGGTTTTGGCCCAGTTAGAGAAAGCCTATTAGCTCTAGCTTTTTAGCAGCAGTGGCAATTCTGTTCTTACTGAGTCATCGAGGAGCACATTGATACTCTGATCTTCCTAAAAGCAGTCATCTGAGAGATTCAGTCCCACAGACTCCTTGGAGGTCTGCAGATAATAGCACATAGCATCTCCTAGTGAAGTCATTTTCTAGCCATCACATTCTATTAGATTTAACCAACATCTTAGAAGAGCCACCTTTCTGCAAAACTCAAGAAAATCAGCAGGAAAGCAGAGGCACTTTTCAAAAACAGGCACGAGGCCTTGGAAATAGCAGCCCTGGTTCTCAGGGTTTCATACGTAATTCCATTGCACAGATGGTTTGTAATATCAGGATCTGGCAGAGCACAAATGCCATGCTCAGGGGCCTGAGCTGGACTCTGAGGGTGAGACAGCTCTACCAGCATAGATGTATTGGAAAGGGAAGGTGATACAAGTCCTGGCCTCTACAAAGCCCTTCAGGTCTGTAATTCTTTCTCTCCACTCCAGAGGAATGGCATTGAAACTTCATATTTCTCTCAGTCCACTGTCTGCTACTGAAGAAGAAGGTTGCCATTTGCTCTGACGCCAAACTTAGATCAGCAAAGACTCTCTGAGGAAGGATGCTGTGTATCCTACAGTCCCTTGGCTGCAGAAGAAACACTGAGATTGTGCTATTTGGCCTTCAGCCGTGTAGCTTGCTGTATCTCTGCCTGATGGCCTGCAAAATGAATATCCAAATTCACCAAGGATAGGTGCTGGTTGTCTCATTACTGTAACAGCCTTTTGAGAATTTGCCATTTCTCTGCTACTGCCTGAAGGGATAGCTAACAGTGTGAAAATAAACTCGAGCAATTTGTGGGTCATAAGAGTGAAACGAAAGTTTGTCACTTAGGTTATTAATTTGACCCCAGAGGCATTTGTGAGAAGAAAAGACTAACAGCATAATTTCTTTCTGGATGGTTAGTCAAAAGTCATGCTCTTGTCACATCACCAGAAACTTCCTTAGCAGATATCAGTTAGTCTGTAGCTTGATTGTCAGTCAAATCATGGTGACATCAGCTATGTTAGCTGGAAGTTTAACAGTTCTGCTCTGCCATTGTAGCCTCTTTTGCTGAAACTTGTCAGCAATTACAGAGGAGGTGGGCTGGCAAGTCCGAAGGGTTGTCTCCTTACAGAGATATTTGTGAATAGCCATACTGATGAGTCTGAGCACTGCTAGTTTATCTCTGGGACTGTATTTGCTGTAAGCAAAATTTGGTGTACCTAGGCTTGTGTCGGAGTAGCCTGGATACCTGGTGACACTGGCATTACATCTGAACTAGAATAGCGTCTTCTGGAAGAAAGCTTCCTTAATTATTCTGAAATCAGGCAGAGGGAGTGTTTTTGTCATATATCCATGAGTTTTTTACATTCCAAACGATAAACTCACTGCATCTCTCATCTCATGAGATTGCAGCTCTGCAGACAAAGTTCTTGACTTCAAGCTAAAATAGCTCATATTAGTAACTTGGCTGTCCTCCTCTTCTCTTTGGCCATGTGCTTCCCAG
Seq C2 exon
GCTTTGCACAGAACTCCAGTATTTTATGCTGCAAACAGAAAGCAACTTGACCTCTGCCAAGGATTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009069:ENSGALT00000014761:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(10.6=41.0)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]