HsaINT1006314 @ hg38
Intron Retention
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr2:31203070-31205499:-
Coord C1 exon
chr2:31205223-31205499
Coord A exon
chr2:31203140-31205222
Coord C2 exon
chr2:31203070-31203139
Length
2083 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
ATTCTGTTTGTCTTTCCCAGGAG
3' ss Score
10.14
Exon sequences
Seq C1 exon
GAGCAGCAGAGACTCCTCAGGAAGACTCACTGGACTGTACCCACCACCTGCCATGTCTCTGTGGCCACCTTTCCGATGCAGATGGAAGCTGGCGCCAAGGTACTCTAGGAGGGCGTCTCCACAGCAACCCCAACAGGACTTTGAGGCCCTGCTGGCAGAGTGCCTGAGGAATGGCTGCCTCTTTGAAGACACCAGCTTCCCGGCCACCCTGAGCTCCATCGGCAGTGGCTCCCTGCTGCAGAAGCTGCCACCCCGCCTGCAGTGGAAGAGGCCCCCG
Seq A exon
GTGAGGCAAAATGTGTCAGCCCAGACCCTCCTTCCCCAGGGTTTAGGGCTTTCAGATACTGCGCCTAAGATATATGGGAGAAAAAAACAGGCTTTTTCCTACTCTCTCCTCTCCACTCAACACAACACACTCTTCTAACACCAGATGTGTAGGAGGTTTTCCCCACATGCCAAGCAATTCTCTGGTGGCCACCATCTGGGTATTCTGTAATGAAATTTAATTCCGACACTGTCTACCTAGAGACGGTGTCAGATCTCACAGGTTGAGTGTTCATCCCACAAAACTGCCCCTACTTCAGATGGCAATCACAAGTCCCAGGTTGTGACCTGTACTCACGACCAGCCATAAATCAGGACCGTGATTCCCATGATCCCCTCCTTGGGTTTGATTAATTTGCTAGAGAGGCTCACAGGACTCAGGGAAATGCTTCGCTTACATTTAATGATTTATTTTAAAGGGTATGACAAAGGATGCAGATGACAGCCAGGTGGAAGAGATGCACAGGGCAAGGCATGGGGAAGGGGTGTGGAGCTCTCATGCCCTCCCTGGTTGTGGCACCCTCCAGGGACCTCCGTGTGTTCAGATATTCAGAGCTCCTTACACCCTGTCCTTTTGGGTTTTTATAGAGGCTTTATTACCTAGGCATGATTGATTACATCATTGGCCTTTGGTGATCAATTTAACCTTCAGTTTCCCTCCCCTCCCCAGTGATCAGGGGGTGGGGCTGAAACTCCCAACCTTCTAATCCTGCCTTGGTCTTTCCAATGACCAGACCCTATCCTGAAGCTACCTAGGGACCACCAGTCACCAGTCAATCATTAGCATACGAAGGACACTCTTATCACTCTAGAGGTTCCCAAGGTTTTAGGAGCTGAATGTCAGAAAACTGAGCAAATGAAGACCAAATATATATTTCACAATATCACACCAGGTCTTACTGTCATTGATCTCCATGAGAAGGGATGGGTATGTTCCCACATTCTCACTTTCCAGATGGAAAAAACCAAGGGTGATTTTGAGAATGGTCTAAGATGTAGCCCTCCCTCAGTCCTGCCCAGAAATATGCAGAACAGCTATAGCCAAAAATATATCAAGGTACTGTTTAGCTTCATCTGAGATGGCAAGGCTTCCTGAGTCACAGCCAATACCATCTGCCAGAGAGATAAATTTTAACATCTCTCCAACCTCCTACCCCCAAAACAGGTTCATGAAACATTTAAATTAAGAAGCTATTAATCACTTTACAAAAGTATTCTTCACTCTATAAAATGCATCAATTCCTTTAAAAAGCAACTTCTTAATGTGTTCAAATGTAATCCATCTCCCTGAAACTTGATTTACCTACAAGATTTCAGGAACACAGCTAGTGAACAGGGTAAAGTGTAAGCCTGTGCCACAGACTTTCCTTTTCTCTTCCCTACTCACCCATCACCATCGATACCTGCAGCCCCAGACTTATGAAGTCCCTACTGTGTGTAAAATTCTGCAGTGAGCCTCCTAAACTACATGGCAGCCAAGATCCTACTTCTCTCAGAAAATCCTGGGAACTGCTGACATAGAGACTCTGTTCTACATCTGACTTGGGGAAACTGTGTCCGCGCAAAGACTGAGAATATAAATCTTGCCACGGAGCAGAGACAACCCCCCTACCACCCCATCACAGGCTGCATCGCATCAGGAAAAGCCAAAAAGAACATCATATTAGGGGTCAGGAATAAGAAGGAGGAATAGGGGAGAAAAAAGCGAAAGAGAAGATATCTAGGAAAACTGAAAATACCTCCTATAAAAGTGTTTCCATTTTTAATAGAAACTCTAAGAAAAGGCATTTTTGGTATAAGTGCTATTTCTCAATATCTACACAGAGTTCTCCAGGGCTCTGACTTACACGAGCTATAAGAAGGAATGAGAAATACAAAGGACAGAATTCTGTATCCCAGATCTTCTGGGATAGCACTGATTACACCTATATTCTGTATCTTTGTCCCCATAAGTACAGTTTTGGGGTATGGGAAAACGTGGTCACTGTAGCTCCAGGAGCTTTTTTGTTCTAGGTCAGAATGACAATTCTGTTTGTCTTTCCCAG
Seq C2 exon
GAGCTGCACAGCAATCCCCAGTTTTATTTTGCCAAGGCCAAAAGGCTGGATCTGTGCCAGGGGATAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711:ENST00000398824:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(32.0=42.7)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(23.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains