DreINT0041109 @ danRer10
Intron Retention
Gene
ENSDARG00000052748 | capn1b
Description
calpain 1, (mu/I) large subunit b [Source:ZFIN;Acc:ZDB-GENE-060503-491]
Coordinates
chr22:26300718-26303996:-
Coord C1 exon
chr22:26303751-26303996
Coord A exon
chr22:26300788-26303750
Coord C2 exon
chr22:26300718-26300787
Length
2963 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TGCTTTCTTAATGTCTGCAGGAG
3' ss Score
7.47
Exon sequences
Seq C1 exon
ATGTTTTCAATTGGAGGTGTGTCGACGCGCATCTACAAGGAGCGCCTGCAGGCAGAAGGGATGGGAGCGAATGACTTGGCCATCAAGTTCCTGAACCAGGACTATGAGGAGCTGAGAAGGGAGTGTGTGGAGAGTGGCAGGCTGTTTGAGGACCCTTGCTTTCCTGCAGTGCCCCAATCACTGGGCTTCAAGGAGCTCGCGCCAAACTCCTCCAAAACACGTGGTGTGAAGTGGATAAGACCCACT
Seq A exon
GTGAGTAACTACGGTTTATACAGTCCTTCTAGAGCTGCCAACAGCAACTAAACACACCTGAACCAGTTAATCAAGGTTATGCTACTGTAGGCATGATAGAAATTTCCCAACAGGTTTGAGATGAACTCTACAGGACAGTTGTCCTCCAGGAGCAGGGTTAGATAGTATGGTTTATAAACAGCATGTAAAGGCAATAAACCAGGAGTGCCCAAACTTTTTGGTATGAAGGGCCAAAAACTAAATATCATCGGTAGCTGTGGGCCAAAGATAAATATTCAAAGCTACTTTACATTACATTTGCCATGGGTAATTTCTTAATTCCTTTCATAATATTAAAAAATAATAGGAAACATTACTTTTAATTAACTATGCAGTATAACCTTTTTAATTATAACTCTAAATTATACTAAGGCTCTGCATTCTCCTCTATGTGTTATACATTTTAAACTAAATCTGATTCATTTACACCAATTAAATTGAAACGTCTAATTTCAGATAGCTTTTTATATGTAGCTTAATAATAAAAAAAAACAAAAAAAGGGTACATTAAATTTGAAATGGCAGTCTCTAAACTATTCTCAGATGGGATGGTGGGCTAGTTCAAAGATTACCTTGGCCCAACTTTGGCCTTCGGGCCCTAGTTTGGGCATCTCTGCACTAAACTGTTTTAATTTATTTTTGACACTGATTGGGGAACGAAGACAGTATAGGAAGTAGGAGGCCTTAGATCAATAAATTACATGAGGTAGATTCCCATTTAAGAAGGTGCAGCAGCTTGTGCTGACTAGTAAATTAAGTGTCGTGTTTAAGTTTTAGCCCAATTTGACTCCTTATTTGACTGGTACAGTAAAGAGAAGATGATAAATTAGGAGATACAAGATCAATAAATTACATGATTTACTTCACCCCTAAAATTTTTACTAATTATTATTGTTATTAATTAAACAACTTCATGTTGTTCCAATCACCCGAGCATTTCAATCAATTTTGCAGGACAAATTAAAGTATTTTAGATGAAAAATCCATAAAAGTACCAAAGATTTTCTCAAAACAGACAAAATGCCTTCAGTGGCTTGATCAGAATATTATCAAGCAATAAGACAATAAGACACCCAAAGAATTTCTATTATTAATTAAACAACTTTGTTTCATTCCAAACACTTTTCATTCACCTTTGGAGCACAAATTAATGTATTTAGATAACATCTGAGAGCTCCCTCGTCCTTCATAAACAGCAAGATTCCTCATTTGTGCAAAGTCCATAAAACATCTGTAAAAACATCCTCAAAACAGACAATATGCCTATAGTGGTTTACTCAGAATATTATCAAGTTATGAGAATACTTTTGTGTGCACTTAATAGTGACTTTATTTAGCAGTTTCTTTTTGTCAGTGTGAGTTTATCCCATGCTTTCTTAAGCACTGCGCAGTGATGCATACTTTAAGTCTAGTGTTTAATTTTTAGCCCAGTTTTACATGCTACTTTATTAGTCTAGTAAAGTAGGAAAAGTTACAGGATCAAGATGACATGATCACATGATCGCAGTGACGTATACGTCTAGTGTTTAATTTTTAGCCCAGTAAGTTATTAGTATAGTATGTTAAGTTACAGAATCAAGATGACATGATCTAGAACAGAGGTCACCAAACTTGTTCCTGGAGAGCTGGTGTCCTGCTGAGTTTAGTTCCAACCCTAATCAAACACAACTGAACCACCTTAATAAGGTCTTACAACTTAAAGAAATTAAGAAATGACATGAGTTACTCCACCCAGAAGTTTTCTGTTATTATTTAATCAATTTTATGTCATTCCAAACACTTGGAGCAAAAATCTTTAGTGCAAAAATTAAGGTAATTTATATGAAATGTGAGAGCTCCCTCATCCTTCTTAGACAGCAAGGTAGCTTGTGCAAAGTCCTTAAAGGAACCAAAAACATCCTCAAAACAGATAATATGCCTTCAGTAGTTCAATCAGAATATTATTAAGCTACTTTTGAATACTTTTGTGCTCACTTAATAATGACTTTATTCAGCAGTTTCTTCTCATCAGTGTGAGTATATTGCACACTTTCATGAGCACCGCGCAGTGACGTATACGTCTAGTGTTTAATGTTTAGCCCAGTAAGTTATTAGTATAGTAAATTATGTTAAGTTACAGGATCAAGATGACATGATCTAGACCAGAGGTCACCAAACTTGTTCCTGAAGGGCTGGTGTCCTGCAGAGTTTAGCTCCAACTCTAATCAAACACAACTGAACCAGCTAATCAAGGTCTTAATAGGTATTCTTGAAACTTTCTGGCAGGTGTGTTGTGGCAAGTTGAAGCCAAACACTGCCGGGACAAAATTGGTGACCCTCAATCTAGACTCAAACTTCTATTTCCCACATGAAAATTAATAAGACATAGCTCAAAACTACAAAAACATAGCTTGTTTTTTATAGGGATAGATAGCAAACAGATAGCTATTTGTCACCTTAATTGATTGTTGTAGCAAAGATAGTAGGACAGTAAGTTAAGAAGATCAAAAAATGACATTAGCTACATCTCTCATTTCACATAAGAGATCCAAGGTGAAACGCCTAATGTTAATTACTGACAGAAGGCTTGTCTATTAATTTTTGACAGTTTTATTGATTGGGAGAGTAAAGAAAGACCAGGAAATTGAGTGAAAGGGTCAAGATTGAGAAATTACATGAGCTAGATTCTTTTATCACTTGAGGAACGAACATCAAGAGTTGGTGCCAGCTACAAATTTCAGCAGTGTGCAGTTGAATTACCTTTTGATTGAAAAATGAATTTTCCTTTATTTGGTTTCTTTACACATTAACTTAAACGTCATTGTTTAATTCCTTCAGACTAGCAATCTGACCAGTGAATCTTTAGCATTTTACATGAAAACACAGACAAGTATTGCAGACAAGTGTTACAAATGTTGTTGTATTTGCTTTCTTAATGTCTGCAG
Seq C2 exon
GAGCTGTCAGAGAATCCTCAGTTTATAGTGGGCGGAGCCACGCGTACAGATATTTGCCAGGGGGCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052748:ENSDART00000105099:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.3=41.5)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]