BtaEX6044957 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015865 | CAPN14
Description
Bos taurus calpain 14 (CAPN14), mRNA. [Source:RefSeq mRNA;Acc:NM_001192425]
Coordinates
chr11:68688096-68690636:+
Coord C1 exon
chr11:68688096-68688366
Coord A exon
chr11:68689586-68689655
Coord C2 exon
chr11:68690518-68690636
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATTTCTGTCTGTTCCTGCAGGAG
3' ss Score
11.79
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GTGCGGAGACCGTCCAGAGGGCCCTGGGGTCTGTGTGGTCCCGGCCATGGCCATGTGTTTTCCTATCTGCAGATACTGGAAGCTGGGGTGTAAGGACTCAATGGGCGACTTTTCGCAGCTCCCCAGACAGGACTACGAGGCCCTGAAGGAAAGGTGCCTGAGGGACGGCTGTCTCTTTGAGGACAAGAGCTTCCCGGCCGCCCTGAGCTCCATCGGCAGTGGGCCCCTGCTGCGGAAGCTGCCGAGCCGCCTGCAGTGGAGGCGGCCTCCG
Seq A exon
GAGCTGCACAGCAACCCCCTTTTCTACTCTGCCAAGGCCAAACGGCTGGATCTGTGCCAGGGATTGGTAG
Seq C2 exon
GTGACTGCTGGTTCTTGGCGGCTTTGCAAGCTCTGAGTTTGCACCAGGACATTCTGAGTCGCGTTGTTCCCCTAAATCAGAGTTTCACGAAGAAGTATGCTGGCATCTTCCAGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015865-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(10.9=42.7)
A:
PF0064816=Peptidase_C2=FE(7.8=100)
C2:
PF0064816=Peptidase_C2=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGCTGTCTCTTTGAGGAC
R:
CGACTCAGAATGTCCTGGTGC
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]