HsaEX6012746 @ hg19
Exon Skipping
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:16664]
Coordinates
chr2:31425000-31428365:-
Coord C1 exon
chr2:31428089-31428365
Coord A exon
chr2:31425936-31426005
Coord C2 exon
chr2:31425000-31425118
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATTCTGTTTGTCTTTCCCAGGAG
3' ss Score
10.14
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GAGCAGCAGAGACTCCTCAGGAAGACTCACTGGACTGTACCCACCACCTGCCATGTCTCTGTGGCCACCTTTCCGATGCAGATGGAAGCTGGCGCCAAGGTACTCTAGGAGGGCGTCTCCACAGCAACCCCAACAGGACTTTGAGGCCCTGCTGGCAGAGTGCCTGAGGAATGGCTGCCTCTTTGAAGACACCAGCTTCCCGGCCACCCTGAGCTCCATCGGCAGTGGCTCCCTGCTGCAGAAGCTGCCACCCCGCCTGCAGTGGAAGAGGCCCCCG
Seq A exon
GAGCTGCACAGCAATCCCCAGTTTTATTTTGCCAAGGCCAAAAGGCTGGATCTGTGCCAGGGGATAGTAG
Seq C2 exon
GAGACTGCTGGTTCTTGGCTGCTTTGCAAGCTCTGGCCTTGCACCAGGACATCCTGAGCCGGGTTGTTCCCCTGAATCAGAGTTTCACTGAGAAGTATGCTGGCATCTTCCGGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(32.0=42.7)
A:
PF0064816=Peptidase_C2=FE(23.0=100)
C2:
PF0064816=Peptidase_C2=FE(39.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACCCCAACAGGACTTTGA
R:
CAGCCAAGAACCAGCAGTCTC
Band lengths:
175-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)