BtaEX6044954 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015865 | CAPN14
Description
Bos taurus calpain 14 (CAPN14), mRNA. [Source:RefSeq mRNA;Acc:NM_001192425]
Coordinates
chr11:68690751-68692173:+
Coord C1 exon
chr11:68690751-68690887
Coord A exon
chr11:68691304-68691478
Coord C2 exon
chr11:68692111-68692173
Length
175 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCCTTTCCTGGGCAGGCT
3' ss Score
9.78
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
TTCTGGCACTTTGGAAAGTGGGTTCCGATTGTGGTAGATGACCGACTACCTGTGAATGAAGCTGGCCAGCTGGTCTTTGTCTCTTCTACCTACAAGAACTTGTTCTGGGGAGCTCTTCTGGAAAAGGCCTATGCTAA
Seq A exon
GCTCTCTGGCTCCTATGAAGACTTGCAGCGTGGACAGGTGTCTGAAGCCCTTGTGGACTTCACTGGAGGGGTGACAATGACCATCAAGCTGTCAGAAGCCCCTGACAGCCTCTGGGATGTCCTAACCCGAGCCATGTACAGCAGAACCCTGATTGGCTGCCAGACCCACTGTGGG
Seq C2 exon
GAGCGGGTGCTGGAGAATGGGTTGGTGGACGGCCATGCCTATACACTCACAGGCCTCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015865-'4-8,'4-6,5-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(15.3=100)
A:
PF0064816=Peptidase_C2=FE(19.7=100)
C2:
PF0064816=Peptidase_C2=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGGGTTCCGATTGTGGT
R:
CTTCCTGAGGCCTGTGAGTGT
Band lengths:
186-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]