DreEX6056087 @ danRer10
Exon Skipping
Gene
ENSDARG00000052917 | si:ch211-202f3.3
Description
si:ch211-202f3.3 [Source:ZFIN;Acc:ZDB-GENE-080917-19]
Coordinates
chr17:45597369-45599298:+
Coord C1 exon
chr17:45597369-45597502
Coord A exon
chr17:45597675-45597849
Coord C2 exon
chr17:45599233-45599298
Length
175 bp
Sequences
Splice sites
3' ss Seq
AGCTAGAATGACTGTTGCAGGGT
3' ss Score
1.03
5' ss Seq
GGGGTAAGC
5' ss Score
7.79
Exon sequences
Seq C1 exon
TTCTGGCGCTTTGGAAAATGGTTCGATGTAGTGATTGACGACAAGCTGCCAACAATCAATCGCCAGCTGATCTTTGTCAAATCTAAAACATATAATGAGTTCTGGCCAGCCTTGCTGGAGAAAGCATATGCCAA
Seq A exon
GGTATGTGGCTCCTATGCTGACATGCACACCGGCCGAGTGTCTGAGGCCCTGCTGGACTTCACTGGCGGGGTTCATATGCACTACGATCTGAAAACGGCTCCGACTGATCTGTGGGAGATAATGTACCGTGCTTCCCAGTCAGAGGTCCTTATGGGCTGTGAAAGCCCAGCAGGG
Seq C2 exon
AATGAGGAGCGGTTACCAAATGGCATAGTTCTGGGCCACGCTTACACTGTGACAAAGGTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052917-'4-9,'4-6,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(15.0=100)
A:
PF0064816=Peptidase_C2=FE(19.7=100)
C2:
PF0064816=Peptidase_C2=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCGCTTTGGAAAATGGT
R:
AGACCTTTGTCACAGTGTAAGCG
Band lengths:
194-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]