HsaEX6012749 @ hg19
Exon Skipping
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:16664]
Coordinates
chr2:31422336-31425118:-
Coord C1 exon
chr2:31425000-31425118
Coord A exon
chr2:31423317-31423491
Coord C2 exon
chr2:31422336-31422398
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTTATTTCTTCCCTGGCCAGGCT
3' ss Score
7.91
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GAGACTGCTGGTTCTTGGCTGCTTTGCAAGCTCTGGCCTTGCACCAGGACATCCTGAGCCGGGTTGTTCCCCTGAATCAGAGTTTCACTGAGAAGTATGCTGGCATCTTCCGGTTCTGG
Seq A exon
GCTCTCTGGTTCCTATGAAGACTTGCAGTCAGGACAGGTGTCTGAAGCCCTTGTAGACTTCACTGGAGGGGTGACAATGACCATCAACCTGGCAGAAGCCCATGGCAACCTCTGGGACATCCTCATCGAAGCCACCTACAACAGAACCCTCATTGGCTGCCAGACCCACTCAGGG
Seq C2 exon
GAGAAGATTCTGGAGAATGGGCTGGTGGAAGGCCATGCCTATACTCTCACAGGAATCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711-'6-8,'6-7,8-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(39.0=100)
A:
PF0064816=Peptidase_C2=PD(3.0=50.0)
C2:
PF0064816=Peptidase_C2=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACTGCTGGTTCTTGGCTG
R:
CCTGATTCCTGTGAGAGTATAGGC
Band lengths:
179-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)