RnoEX6018563 @ rn6
Exon Skipping
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112256043-112258181:+
Coord C1 exon
chr3:112256043-112256176
Coord A exon
chr3:112256724-112256892
Coord C2 exon
chr3:112258038-112258181
Length
169 bp
Sequences
Splice sites
3' ss Seq
ACTTTTGTCCTCTCTCCAAGGCT
3' ss Score
7.84
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
TTCTGGCGCTATGGAGACTGGGTAGATGTGGTTATTGACGACTGTCTGCCGACATACAACAACCAGCTGGTCTTCACCAAATCCAACCACCGCAATGAGTTCTGGAGTGCTCTACTGGAGAAAGCATATGCCAA
Seq A exon
GCTCCATGGTTCCTATGAAGCTCTGAAAGGTGGGAACACCACAGAAGCCATGGAGGACTTCACAGGAGGGGTGACAGAGTTTTTTGAGATCAAGGATGCTCCGAGTGACATGTACAAGATCATGAGGAAAGCTATCGAGAGAGGCTCCCTCATGGGCTGCTCCATTGAT
Seq C2 exon
GATGGCACCAACATGACTTATGGAACCTCTCCTTCTGGTCTGAACATGGGGGAATTGATTGCGCGGATGGTGAGAAATATGGATAACTCGCTGCTCAGAGACTCAGACCTGGACCCCAGGGCCTCAGATGACAGACCGTCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609-'2-12,'2-5,8-12=AN
Average complexity
A_C3
Mappability confidence:
94%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.312
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(21.6=100)
A:
PF0064816=Peptidase_C2=FE(27.5=100)
C2:
PF0064816=Peptidase_C2=PD(4.4=18.8),PF0064816=Peptidase_C2=PU(30.4=93.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAACTGTATTGAGACTTCTTCCA
R:
AACTCTCCATCCTCGGTGACC
Band lengths:
172-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]