RnoEX0016713 @ rn6
Exon Skipping
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112256724-112259909:+
Coord C1 exon
chr3:112256724-112256892
Coord A exon
chr3:112258038-112258181
Coord C2 exon
chr3:112259826-112259909
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCTTGCCTATCGGGGCTCAGGAT
3' ss Score
5.63
5' ss Seq
CGGGTGTGT
5' ss Score
5.31
Exon sequences
Seq C1 exon
GCTCCATGGTTCCTATGAAGCTCTGAAAGGTGGGAACACCACAGAAGCCATGGAGGACTTCACAGGAGGGGTGACAGAGTTTTTTGAGATCAAGGATGCTCCGAGTGACATGTACAAGATCATGAGGAAAGCTATCGAGAGAGGCTCCCTCATGGGCTGCTCCATTGAT
Seq A exon
GATGGCACCAACATGACTTATGGAACCTCTCCTTCTGGTCTGAACATGGGGGAATTGATTGCGCGGATGGTGAGAAATATGGATAACTCGCTGCTCAGAGACTCAGACCTGGACCCCAGGGCCTCAGATGACAGACCGTCACGG
Seq C2 exon
ACAATTGTTCCGGTGCAGTATGAAACAAGAATGGCCTGTGGACTGGTGAAAGGGCACGCCTATTCAGTCACTGGGCTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.312 C2=0.027
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(27.5=100)
A:
PF0064816=Peptidase_C2=PD(4.4=18.8),PF0064816=Peptidase_C2=PU(30.4=93.8)
C2:
PF0064816=Peptidase_C2=FE(18.2=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCATGGTTCCTATGAAGCT
R:
CAGCCCAGTGACTGAATAGGC
Band lengths:
247-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]