BtaEX0006996 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008868 | CAPN3
Description
Bos taurus calpain 3, (p94) (CAPN3), mRNA. [Source:RefSeq mRNA;Acc:NM_174260]
Coordinates
chr10:37863535-37866668:+
Coord C1 exon
chr10:37863535-37863703
Coord A exon
chr10:37864495-37864641
Coord C2 exon
chr10:37866585-37866668
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCTGTTGGGCCTCAGGAT
3' ss Score
8.28
5' ss Seq
CGGGTGTGT
5' ss Score
5.31
Exon sequences
Seq C1 exon
GCTCCATGGTTCGTATGAAGCCCTGAAAGGTGGGAACACTACAGAGGCCATGGAGGACTTCACGGGAGGAGTGACAGAGTTTTTTGAAATCAAGGATGCTCCCAGAGACATGTACAAGATCATGAAGAAAGCCATCGAGAGGGGTTCCCTCATGGGCTGCTCCATTGAT
Seq A exon
GATGGCACAAACATGACCTATGGAACCTCTCCTTCTGGGCTGAAAATGGGGGAGTTGATTGAGCGGATGGTGAGGAATATGGATAACTCGCGGCTCAGGGACTCAGACCTCATCCCTGAGGGATGCTCAGATGACAGACCAACTCGG
Seq C2 exon
ATGATTGTTCCAGTTCAGTTTGAGACAAGAATGGCCTGTGGGCTGGTCAAAGGCCATGCCTACTCAGTCACTGGGCTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008868_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.204 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(27.5=100)
A:
PF0064816=Peptidase_C2=PD(4.4=18.4),PF0064816=Peptidase_C2=PU(30.4=91.8)
C2:
PF0064816=Peptidase_C2=FE(18.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGTATGAAGCCCTGAAAGGT
R:
CTCCAGCCCAGTGACTGAGTA
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development