GgaEX6038024 @ galGal4
Exon Skipping
Gene
ENSGALG00000009050 | CAPN3
Description
calpain-3 [Source:RefSeq peptide;Acc:NP_001004405]
Coordinates
chr5:24945778-24948709:+
Coord C1 exon
chr5:24945778-24945946
Coord A exon
chr5:24946566-24946706
Coord C2 exon
chr5:24948626-24948709
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCCATTCTCTACCAGGAC
3' ss Score
11.12
5' ss Seq
TGGGTTTGT
5' ss Score
0.77
Exon sequences
Seq C1 exon
ACTCCATGGATCCTATGAAGCTTTGAAAGGAGGCAACACCACAGAGGCCATGGAGGATTTCACTGGAGGGGTGACAGAGTTCTATGAGATAAAGGATGCTCCTAAAGATATCTATAAAATCATGAAACATGCCATTGCCAGAGGATCCCTCATGGCCAGCTCCATTGAT
Seq A exon
GACAACCTAGGCTTCTCCTACGGAGCAGCTCCTCGAAGTGACATTGGAGAACTGATTGCTCGAATGGTGAAGAACCTAGAAAATGCACAGATGACTTACTCCACTGTGGACTACCAGGGGACGGATGAAAGGCCAGCCTGG
Seq C2 exon
ACCATAATGCCAATGCAGTATGAAACCCGGATGTCTTGTGGGCTGGTCAAAGGTCACGCATACTCTGTCACAGCTGTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(16.3=100)
A:
PF0064816=Peptidase_C2=FE(13.4=100)
C2:
PF0064816=Peptidase_C2=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCATGGATCCTATGAAGCT
R:
AGCTGTGACAGAGTATGCGTG
Band lengths:
244-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]