RnoEX0016712 @ rn6
Exon Skipping
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112258038-112262081:+
Coord C1 exon
chr3:112258038-112258181
Coord A exon
chr3:112259826-112259909
Coord C2 exon
chr3:112261996-112262081
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTCTGGTTATTACTCTACAGACA
3' ss Score
5.79
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GATGGCACCAACATGACTTATGGAACCTCTCCTTCTGGTCTGAACATGGGGGAATTGATTGCGCGGATGGTGAGAAATATGGATAACTCGCTGCTCAGAGACTCAGACCTGGACCCCAGGGCCTCAGATGACAGACCGTCACGG
Seq A exon
ACAATTGTTCCGGTGCAGTATGAAACAAGAATGGCCTGTGGACTGGTGAAAGGGCACGCCTATTCAGTCACTGGGCTGGAGGAG
Seq C2 exon
GCCCTGTTCAAAGGCGAGAAGGTGAAGCTGGTGCGGCTGCGGAACCCCTGGGGCCAGGTGGAGTGGAACGGCTCTTGGAGTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609-'9-11,'9-8,10-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(4.4=18.8),PF0064816=Peptidase_C2=PU(30.4=93.8)
A:
PF0064816=Peptidase_C2=FE(18.2=100)
C2:
PF0064816=Peptidase_C2=FE(18.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCGCGGATGGTGAGAAAT
R:
CATCACTCCAAGAGCCGTTCC
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]