GgaEX6038023 @ galGal4
Exon Skipping
Gene
ENSGALG00000009050 | CAPN3
Description
calpain-3 [Source:RefSeq peptide;Acc:NP_001004405]
Coordinates
chr5:24946566-24949232:+
Coord C1 exon
chr5:24946566-24946706
Coord A exon
chr5:24948626-24948709
Coord C2 exon
chr5:24949147-24949232
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTATCCTGTGTCTAACAGACC
3' ss Score
9.77
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GACAACCTAGGCTTCTCCTACGGAGCAGCTCCTCGAAGTGACATTGGAGAACTGATTGCTCGAATGGTGAAGAACCTAGAAAATGCACAGATGACTTACTCCACTGTGGACTACCAGGGGACGGATGAAAGGCCAGCCTGG
Seq A exon
ACCATAATGCCAATGCAGTATGAAACCCGGATGTCTTGTGGGCTGGTCAAAGGTCACGCATACTCTGTCACAGCTGTGGAAGAG
Seq C2 exon
ACAACATATAAAGGGGAAAAGATGCGTCTGGTAAGGCTGAGAAACCCGTGGGGACAGGTGGAATGGAATGGACCTTGGAGTGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050-'7-11,'7-9,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.4=100)
A:
PF0064816=Peptidase_C2=FE(7.9=100)
C2:
PF0064816=Peptidase_C2=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTCCTCGAAGTGACATT
R:
CACGGGTTTCTCAGCCTTACC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]