BtaEX6052766 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008868 | CAPN3
Description
Bos taurus calpain 3, (p94) (CAPN3), mRNA. [Source:RefSeq mRNA;Acc:NM_174260]
Coordinates
chr10:37863535-37867687:+
Coord C1 exon
chr10:37863535-37863703
Coord A exon
chr10:37866585-37866668
Coord C2 exon
chr10:37867602-37867687
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTCCGGTTTTCACTCCACAGATG
3' ss Score
10.1
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GCTCCATGGTTCGTATGAAGCCCTGAAAGGTGGGAACACTACAGAGGCCATGGAGGACTTCACGGGAGGAGTGACAGAGTTTTTTGAAATCAAGGATGCTCCCAGAGACATGTACAAGATCATGAAGAAAGCCATCGAGAGGGGTTCCCTCATGGGCTGCTCCATTGAT
Seq A exon
ATGATTGTTCCAGTTCAGTTTGAGACAAGAATGGCCTGTGGGCTGGTCAAAGGCCATGCCTACTCAGTCACTGGGCTGGAGGAG
Seq C2 exon
GCCCTGTACAAGGGTGAGAAAGTGAAGCTGGTGCGGCTGCGGAACCCCTGGGGCCAGGTGGAGTGGAATGGCTCCTGGAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008868-'7-10,'7-9,13-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(27.5=100)
A:
PF0064816=Peptidase_C2=FE(18.2=100)
C2:
PF0064816=Peptidase_C2=FE(18.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTACAGAGGCCATGGAGGA
R:
CGCACCAGCTTCACTTTCTCA
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]