MmuEX6104188 @ mm10
Exon Skipping
Gene
ENSMUSG00000079110 | Capn3
Description
calpain 3 [Source:MGI Symbol;Acc:MGI:107437]
Coordinates
chr2:120486333-120489753:+
Coord C1 exon
chr2:120486333-120486476
Coord A exon
chr2:120488074-120488157
Coord C2 exon
chr2:120489668-120489753
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTCTGGTTATTTCTCTACAGACA
3' ss Score
7.84
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GATGGCACGAACATGACTTATGGAACCTCTCCTTCTGGTCTGAACATGGGGGAGTTGATTGCACGGATGGTGAGAAATATGGATAACTCGCTGCTCAGAGACTCAGACCTGGACCCCAGGGGCTCAGATGACAGACCGTCACGG
Seq A exon
ACAATTGTTCCAGTGCAGTATGAAACAAGAATGGCCTGTGGGTTGGTGAAAGGGCATGCCTATTCAGTCACTGGGCTGGAGGAG
Seq C2 exon
GCCCTGTTCAAAGGTGAGAAGGTGAAGTTGGTGCGGCTGCGGAACCCCTGGGGCCAGGTGGAGTGGAACGGCTCTTGGAGTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079110-'27-20,'27-19,29-20
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=0.041 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(4.4=18.8),PF0064816=Peptidase_C2=PU(30.4=93.8)
A:
PF0064816=Peptidase_C2=FE(18.2=100)
C2:
PF0064816=Peptidase_C2=FE(18.9=100)
Main Skipping Isoform:
ENSMUST00000028749fB6989
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTGATTGCACGGATGGT
R:
CATCACTCCAAGAGCCGTTCC
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types