RnoEX6018562 @ rn6
Exon Skipping
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112259826-112263960:+
Coord C1 exon
chr3:112259826-112259909
Coord A exon
chr3:112261996-112262081
Coord C2 exon
chr3:112263883-112263960
Length
86 bp
Sequences
Splice sites
3' ss Seq
GAGCTGTCTCTTTGCCCCAGGCC
3' ss Score
8.54
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ACAATTGTTCCGGTGCAGTATGAAACAAGAATGGCCTGTGGACTGGTGAAAGGGCACGCCTATTCAGTCACTGGGCTGGAGGAG
Seq A exon
GCCCTGTTCAAAGGCGAGAAGGTGAAGCTGGTGCGGCTGCGGAACCCCTGGGGCCAGGTGGAGTGGAACGGCTCTTGGAGTGATGG
Seq C2 exon
TTGGAAGGACTGGAGCTTTGTGGACAAAGACGAGAAGGCCCGTCTGCAGCACCAGGTCACCGAGGATGGAGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609-'2-19,'2-11,11-19=AN
Average complexity
A_C2
Mappability confidence:
95%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.2=100)
A:
PF0064816=Peptidase_C2=FE(18.9=100)
C2:
PF0064816=Peptidase_C2=FE(17.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]