GgaEX1012808 @ galGal4
Exon Skipping
Gene
ENSGALG00000009050 | CAPN3
Description
calpain-3 [Source:RefSeq peptide;Acc:NP_001004405]
Coordinates
chr5:24948626-24949767:+
Coord C1 exon
chr5:24948626-24948709
Coord A exon
chr5:24949147-24949232
Coord C2 exon
chr5:24949690-24949767
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTCTCTTTCAATTAGACA
3' ss Score
7.47
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
ACCATAATGCCAATGCAGTATGAAACCCGGATGTCTTGTGGGCTGGTCAAAGGTCACGCATACTCTGTCACAGCTGTGGAAGAG
Seq A exon
ACAACATATAAAGGGGAAAAGATGCGTCTGGTAAGGCTGAGAAACCCGTGGGGACAGGTGGAATGGAATGGACCTTGGAGTGATAA
Seq C2 exon
ATCAGAAGAGTGGAACTTCATTGATGAAGAAGAGAAAACCCGCCTGCAACACAAGATTGCAGAAGATGGGGAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(7.9=100)
A:
PF0064816=Peptidase_C2=FE(8.2=100)
C2:
PF0064816=Peptidase_C2=FE(7.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATGCAGTATGAAACCCG
R:
CAGAATTCCCCATCTTCTGCA
Band lengths:
154-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]