HsaEX0012367 @ hg38
Exon Skipping
Gene
ENSG00000092529 | CAPN3
Description
calpain 3 [Source:HGNC Symbol;Acc:HGNC:1480]
Coordinates
chr15:42392639-42396877:+
Coord C1 exon
chr15:42392639-42392722
Coord A exon
chr15:42394256-42394341
Coord C2 exon
chr15:42396800-42396877
Length
86 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTCTGTGTGCTTAAGGTC
3' ss Score
7.38
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
ACAATCATTCCGGTTCAGTATGAGACAAGAATGGCCTGCGGGCTGGTCAGAGGTCACGCCTACTCTGTCACGGGGCTGGATGAG
Seq A exon
GTCCCGTTCAAAGGTGAGAAAGTGAAGCTGGTGCGGCTGCGGAATCCGTGGGGCCAGGTGGAGTGGAACGGTTCTTGGAGTGATAG
Seq C2 exon
ATGGAAGGACTGGAGCTTTGTGGACAAAGATGAGAAGGCCCGTCTGCAGCACCAGGTCACTGAGGATGGAGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529-'7-21,'7-20,8-21=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(18.2=100)
A:
PF0064816=Peptidase_C2=FE(18.9=100)
C2:
PF0064816=Peptidase_C2=FE(17.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATCATTCCGGTTCAGTATGAGA
R:
AACTCTCCATCCTCAGTGACCT
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development