DreEX6056045 @ danRer10
Exon Skipping
Gene
ENSDARG00000041864 | capn3a
Description
calpain 3a, (p94) [Source:ZFIN;Acc:ZDB-GENE-040912-97]
Coordinates
chr17:45336390-45339557:+
Coord C1 exon
chr17:45336390-45336473
Coord A exon
chr17:45336554-45336648
Coord C2 exon
chr17:45339480-45339557
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTGACGTTGTGTGTCTGCAGTGT
3' ss Score
7.4
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
TCTCTGGTTCCAGCCCGCTTTGAAACTCGTACTGCGACAGGTCTTGTGAAGGGTCATGCCTACTCTGTGACCGCTGTTGAGGAG
Seq A exon
TGTAAACAGAGCCAGCAGAAGGAGTCTAGAGTGCGTCTGGTGCGTTTGCGTAACCCCTGGGGTCAAGTAGAGTGGAATGGACCATGGAGTGACAA
Seq C2 exon
TTCTAAAGAATGGGAAAGTCTTTCTAAAGCGGAAAAAGAGAAACTCCAGCAACAGAACGCTGAAGATGGAGAGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041864-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.370
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(16.5=100)
A:
PF0064816=Peptidase_C2=FE(10.2=100)
C2:
PF0064816=Peptidase_C2=FE(15.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTCCAGCCCGCTTTG
R:
CAAAACTCTCCATCTTCAGCGT
Band lengths:
159-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]