GgaEX7005506 @ galGal4
Exon Skipping
Gene
ENSGALG00000009050 | CAPN3
Description
calpain-3 [Source:RefSeq peptide;Acc:NP_001004405]
Coordinates
chr5:24945374-24946706:+
Coord C1 exon
chr5:24945374-24945507
Coord A exon
chr5:24945778-24945946
Coord C2 exon
chr5:24946566-24946706
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTCCTCTTTCCAAGACT
3' ss Score
7.05
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
TTTTGGCGCTACGGAGACTGGGTGGATGTCATCATTGATGACTGCCTACCCACATACAACAACCAGCTGGTCTTCACCAAATCCTCCCAGCGCAATGAGTTCTGGAGTGCTCTCCTGGAAAAGGCCTATGCAAA
Seq A exon
ACTCCATGGATCCTATGAAGCTTTGAAAGGAGGCAACACCACAGAGGCCATGGAGGATTTCACTGGAGGGGTGACAGAGTTCTATGAGATAAAGGATGCTCCTAAAGATATCTATAAAATCATGAAACATGCCATTGCCAGAGGATCCCTCATGGCCAGCTCCATTGAT
Seq C2 exon
GACAACCTAGGCTTCTCCTACGGAGCAGCTCCTCGAAGTGACATTGGAGAACTGATTGCTCGAATGGTGAAGAACCTAGAAAATGCACAGATGACTTACTCCACTGTGGACTACCAGGGGACGGATGAAAGGCCAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(12.8=100)
A:
PF0064816=Peptidase_C2=FE(16.3=100)
C2:
PF0064816=Peptidase_C2=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGGAGACTGGGTGGATGT
R:
TTCATCCGTCCCCTGGTAGTC
Band lengths:
255-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]