MmuEX0009067 @ mm9
Exon Skipping
Gene
ENSMUSG00000079110 | Capn3
Description
calpain 3 [Source:MGI Symbol;Acc:MGI:107437]
Coordinates
chr2:120310227-120313893:+
Coord C1 exon
chr2:120310227-120310360
Coord A exon
chr2:120310917-120311085
Coord C2 exon
chr2:120313810-120313893
Length
169 bp
Sequences
Splice sites
3' ss Seq
CCTTTTGTCCTCTCTCCAAGGCT
3' ss Score
8.08
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
TTCTGGCGCTATGGAGACTGGGTAGATGTGGTCATTGACGACTGTCTGCCAACATACAACAATCAGCTGGTTTTCACCAAATCCAACCACCGCAATGAGTTCTGGAGTGCTCTCCTTGAGAAGGCTTATGCCAA
Seq A exon
GCTCCATGGCTCCTATGAAGCTCTGAAAGGTGGGAATACCACAGAAGCCATGGAGGACTTCACAGGAGGGGTGACAGAGTTTTTTGAGATCAAGGATGCTCCGAGTGACATGTACAAGATTATGAGGAAAGCTATCGAGAGAGGCTCCCTCATGGGCTGCTCCATTGAC
Seq C2 exon
ACAATTGTTCCAGTGCAGTATGAAACAAGAATGGCCTGTGGGTTGGTGAAAGGGCATGCCTATTCAGTCACTGGGCTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079110-'12-17,'12-15,14-17
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(21.6=100)
A:
PF0064816=Peptidase_C2=FE(27.5=100)
C2:
PF0064816=Peptidase_C2=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGCGCTATGGAGACTGG
R:
CTCCTCCAGCCCAGTGACTG
Band lengths:
218-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: