MmuEX6029804 @ mm10
Exon Skipping
Gene
ENSMUSG00000026509 | Capn2
Description
calpain 2 [Source:MGI Symbol;Acc:MGI:88264]
Coordinates
chr1:182490867-182492870:-
Coord C1 exon
chr1:182492752-182492870
Coord A exon
chr1:182492062-182492195
Coord C2 exon
chr1:182490867-182491035
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCTCTTGCCTTGCAGTTC
3' ss Score
10.87
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGGACTGCTGGCTGCTGGCTGCCATCGCCTCCCTCACCTTGAATGAGGAAATCCTGGCTCGGGTTGTGCCTCCAGATCAGAGCTTCCAGGAAAACTATGCAGGCATCTTCCACTTCCAG
Seq A exon
TTCTGGCAATATGGCGAGTGGGTGGAGGTGGTGGTGGACGACAGGCTGCCCACTAAGGACGGGGAGCTGCTCTTTGTGCATTCAGCTGAAGGGAGTGAGTTCTGGAGTGCCCTTCTGGAGAAAGCCTATGCCAA
Seq C2 exon
GATCAATGGGTGCTATGAAGCACTCTCAGGGGGTGCCACCACGGAAGGCTTTGAAGACTTCACAGGAGGCATTGCTGAGTGGTATGAGCTGAGGAAGCCTCCTCCCAACTTGTTCAAGATCATCCAGAAGGCTTTGGAGAAAGGTTCTCTGCTTGGCTGCTCTATCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026509-'9-9,'9-7,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.0=100)
A:
PF0064816=Peptidase_C2=FE(14.7=100)
C2:
PF0064816=Peptidase_C2=FE(18.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGCCTCCCTCACCTTGAAT
R:
GCAGCCAAGCAGAGAACCTTT
Band lengths:
256-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types