GgaEX1012803 @ galGal4
Exon Skipping
Gene
ENSGALG00000009360 | CAPN2
Description
calpain-2 catalytic subunit precursor [Source:RefSeq peptide;Acc:NP_990411]
Coordinates
chr3:17033801-17035286:-
Coord C1 exon
chr3:17035168-17035286
Coord A exon
chr3:17034794-17034927
Coord C2 exon
chr3:17033801-17033969
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTATTTGCGTTCTCTCCCAGTTC
3' ss Score
8.45
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
GGGACTGCTGGCTCTTGGCAGCTATTGCCTCCCTCACTCTGAATGAAGAAATTCTGGCCCGTGTTGTTCCCAGAGACCAGAGCTTCCAGGATGAATATGCAGGAATCTTCCACTTCCAG
Seq A exon
TTCTGGCAGTACGGAGAGTGGGTGGACGTCGTGGTGGATGACCGGCTGCCCACCAAGAACGGGGAGCTGCTCTTCGTGCACTCGGCAGAGGGCAGCGAGTTCTGGAGCGCACTGCTGGAGAAGGCCTACGCCAA
Seq C2 exon
GCTGAATGGATCATACGAGGCTCTCTCTGGTGGCACCACCACTGAAGGCTTTGAGGACTTCACTGGTGGGATTGCAGAATGGTATGAGTTGCAGAAGGCACCACCCAACCTCTTCAAAATCATTCAGAAAGCACTGCAGAAAGGCTCTCTCCTTGGCTGCTCCATCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009360-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.0=100)
A:
PF0064816=Peptidase_C2=FE(14.7=100)
C2:
PF0064816=Peptidase_C2=FE(18.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCCCTCACTCTGAATGA
R:
GAGAGCCTTTCTGCAGTGCTT
Band lengths:
243-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]