DreEX6099410 @ danRer10
Exon Skipping
Gene
ENSDARG00000055592 | capn2b
Description
calpain 2, (m/II) large subunit b [Source:ZFIN;Acc:ZDB-GENE-050522-84]
Coordinates
chr22:26322064-26326655:-
Coord C1 exon
chr22:26326537-26326655
Coord A exon
chr22:26324210-26324343
Coord C2 exon
chr22:26322064-26322232
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTCTGTACCTTCTCCACCAGTTC
3' ss Score
6.96
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GTGACTGTTGGCTGCTGGCTGCTATTGCCTCCCTGACGCAGAATGAAGATGTTTTGGCAAGAGTTGTGCCCAATGGACAGGAGTTTGATGGCACTTATGCAGGAATCTTCCATTTCCAG
Seq A exon
TTCTGGCAGTTTGGCGAGTGGGTGGATGTGGTCATTGACGACCGGCTGCCGGTGAAAGATGGCGAGCTGTTGTTTGTTCACTCCGCTGAGAAAAACGAGTTCTGGAGCGCCCTGCTGGAGAAGGCCTATGCTAA
Seq C2 exon
GGTGAACGGCTGTTATGAAGCCCTGTCTGGAGGATCCACTAGCGAGGGTTTTGAGGACTTCACTGGAGGCATCGCTGAGAGCTACGAGATCAGAAAAGCACCGACCAATTTGTTTCAGATCATCCAGAAAGCCCTGGAGGCTGGAGCTTTGCTGGGCTGCTCCATCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055592-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.1=100)
A:
PF0064816=Peptidase_C2=FE(14.8=100)
C2:
PF0064816=Peptidase_C2=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCTGACGCAGAATGAAG
R:
GATGGAGCAGCCCAGCAAAG
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]