RnoEX6045718 @ rn6
Exon Skipping
Gene
ENSRNOG00000003468 | Capn8
Description
calpain 8 [Source:RGD Symbol;Acc:620085]
Coordinates
chr13:101011232-101013055:+
Coord C1 exon
chr13:101011232-101011350
Coord A exon
chr13:101011824-101011957
Coord C2 exon
chr13:101012887-101013055
Length
134 bp
Sequences
Splice sites
3' ss Seq
GCTGTGTTTCCCACCCATAGTTC
3' ss Score
8.35
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAGACTGCTGGCTTCTAGCAGCCATTGCCTCCCTCACCTTGAATGAAAAGCTGCTTTACCGGGTGCTTCCCAGGGACCAGAGCTTCCAGAAGGACTACGCGGGCATATTTCATTTCCAG
Seq A exon
TTCTGGCAGTATGGAGAATGGGTGGAGGTGGTCATTGATGACCGGCTCCCCACCAAGAACGGGCAGCTGCTTTTTCTACACTCCGAAGAAGGCAATGAGTTTTGGAGCGCTCTGCTGGAGAAAGCCTATGCCAA
Seq C2 exon
GCTAAATGGTTCGTATGAGGCTCTTGTTGGAGGCTCCACAATCGAGGGGTTTGAGGATTTCACAGGTGGCATCTCTGAGTTTTATGACTTGAAGAAGCCTCCGGAAAATCTGTACTACATCATCCAGAAGGCCCTCCGCAAAGGCTCTCTGCTGGGCTGCTCCATTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003468-'7-6,'7-5,8-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.0=100)
A:
PF0064816=Peptidase_C2=FE(14.7=100)
C2:
PF0064816=Peptidase_C2=FE(18.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCCCTCACCTTGAATGA
R:
GCAGAGAGCCTTTGCGGAG
Band lengths:
246-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]