GgaEX6029120 @ galGal3
Exon Skipping
Gene
ENSGALG00000009382 | CAPN8
Description
NA
Coordinates
chr3:18832940-18834788:+
Coord C1 exon
chr3:18832940-18833058
Coord A exon
chr3:18833872-18834005
Coord C2 exon
chr3:18834620-18834788
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCTTCTTCTCATCAGTTC
3' ss Score
8.41
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTGACTGCTGGCTCCTGGCTGCCATTGCATCTCTGACTTTGAATCCAGATGTTCTTCACCAAGTTGTTCCCAAGGCTCAGAGTTTTCAGGAGAACTATGCTGGGATCTTTCATTTCCAG
Seq A exon
TTCTGGCAGTATGGAGAGTGGGTGGATGTGGTGGTAGACGACCGGCTGCCCACCAAGAACGGGGAGCTGCTCTTCGTGCATTCAGAGGAAGGCAATGAGTTCTGGAGCGCACTGCTGGAGAAAGCCTACGCCAA
Seq C2 exon
GCTGAATGGTTCTTATGAAGCTCTAGCTGGAGGGTCCACTATAGAGGGGTTTGAGGATTTTACTGGAGGCATCTCTGAATCCTATGACCTGCGGAGGGCTCCAGCAAACCTGTTCCAAATTGTCCAGAAGGCTCTGAGGGCTGGCTCACTGCTCGGCTGTTCCATTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.9=100)
A:
PF0064816=Peptidase_C2=FE(15.7=100)
C2:
PF0064816=Peptidase_C2=FE(19.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATTGCATCTCTGACTTTGA
R:
CCAGCCCTCAGAGCCTTCT
Band lengths:
244-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]