BtaEX6045966 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039186 | MGC151949
Description
Bos taurus glycoprotein galactosyltransferase alpha 1, 3-like (LOC527409), mRNA. [Source:RefSeq mRNA;Acc:NM_001077974]
Coordinates
chr11:92276748-92279410:-
Coord C1 exon
chr11:92279273-92279410
Coord A exon
chr11:92278481-92278566
Coord C2 exon
chr11:92276748-92276780
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCTTTTTATTCCCAGGAC
3' ss Score
10.17
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
AAAGATCTCAAAATGTTCTACCTGAAAACTGTCTAGTCTCTTAGGATTCTCTACATGAATTCCCAAACCGCTATACCATAAACATCGTCTCTGAGAAGAGCTGTATAAAATTCCTATGTAATCATTGTGAAACAAAAG
Seq A exon
GACAGAATGAGATACCAAAGGAAAACAATTCAAGGGTTATTATTTTTATTGTTTCTGTGGACCTTTCAGAGAATGTATCATTTCAG
Seq C2 exon
CACAAAGAAATTACAGAGGATGTATCAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039186-'0-2,'0-0,1-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF034148=Glyco_transf_6=PU(4.1=48.1)
C2:
PF034148=Glyco_transf_6=FE(3.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCAAAATGTTCTACCTGAAAACT
R:
CAGCACTGATACATCCTCTGT
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]