MmuEX0001446 @ mm10
Exon Skipping
Gene
ENSMUSG00000079421 | 4930402F06Rik
Description
RIKEN cDNA 4930402F06 gene [Source:MGI Symbol;Acc:MGI:1922104]
Coordinates
chr2:35389578-35397175:-
Coord C1 exon
chr2:35396906-35397175
Coord A exon
chr2:35390474-35390557
Coord C2 exon
chr2:35389578-35389610
Length
84 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCTTTTCCCTCTAGGAA
3' ss Score
13.76
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
CCTCTGGCTGACTGCCACATGGTTTTCAACAGAAACTGAATGGATTCTGGGACATCTGGAGCTGGAGGAACATTTTTTTTTCTTTTTGTAAAGCACCCAGCTTCGGTATTTTGGTGGTAGCAACACAACACACACCAAGAAGTGATCTGGAATTCAGTGGCCCTTGCTTCAACTGCTCTATCAAGGGGAGCTATAGCCTTCAACAACCTGTCCCACCCCTCTCTGGGCTACTCAACTTTATAGGTGACACTGGTCATCAGCATCCATTGG
Seq A exon
GAAAAGAATGAGATACAAAATATTAATCCTATCGCTATTGGTTCTAATGTCTCTCTATGCCCAGTATAGAGAATACCCTTTCAG
Seq C2 exon
CATAAAGAAACTGCAGATGACGTATCAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079421_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF034148=Glyco_transf_6=PU(6.2=76.9)
C2:
PF034148=Glyco_transf_6=PU(0.7=33.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACACAACACACACCAAGA
R:
GCACTGATACGTCATCTGCAGT
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types