RnoEX6016604 @ rn6
Exon Skipping
Gene
ENSRNOG00000039210 | LOC502618
Description
ABO-family member 6 [Source:RGD Symbol;Acc:1560029]
Coordinates
chr3:14605191-14606628:-
Coord C1 exon
chr3:14606550-14606628
Coord A exon
chr3:14606100-14606183
Coord C2 exon
chr3:14605191-14605223
Length
84 bp
Sequences
Splice sites
3' ss Seq
TATTTTTCTTTTTCCTCCAGGAA
3' ss Score
11.95
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
AAGCTGAGAGAGTAGGAAGAGGAGGCGGCTGCTGCAGGAGGACTTGGCCCAGGTCGCCCTCAGCCCAAACCTCATATAG
Seq A exon
GAAAAGAATGAGATACAAAGTATTAATCCTGTTGCTGTTGGTGTTAATGTCTCTCTATGCCCAGTATAGAGAATACCCTTTCAG
Seq C2 exon
TTTAAAGAAACTGCAGATGACGTATCAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039210-'3-2,'3-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF034148=Glyco_transf_6=PU(5.3=65.4)
C2:
PF034148=Glyco_transf_6=FE(3.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAGAGAGTAGGAAGAGGA
R:
CAGCACTGATACGTCATCTGCA
Band lengths:
111-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]