BtaEX6046024 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039172 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr11:94233087-94235541:+
Coord C1 exon
chr11:94233087-94233212
Coord A exon
chr11:94233813-94233956
Coord C2 exon
chr11:94235500-94235541
Length
144 bp
Sequences
Splice sites
3' ss Seq
TAATCAGTCTGCTGTTTCAGGAG
3' ss Score
5.55
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
Exon sequences
Seq C1 exon
ATGCCTGAGGAACAAGCATTCAGTGTTCTGGTCAAGATCATGTTTGACTATGGTCTCAGGGAACTTTTCAAACAAAACTTTGAAGATTTGCATTGCAAATTTTACCAGTTGGAGCGCCTCATGCAG
Seq A exon
GAGTACATCCCTGACCTGTACAACCACTTCCTGGACATAAGCCTTGAAGCGCACATGTATGCCTCCCAGTGGTTTCTTACGCTCTTCACTGCGAAGTTCCCTCTGTACATGGTCTTCCATATCATCGACCTGCTTTTATGTGAG
Seq C2 exon
GGAATAAGTGTTATATTTAACGTCGCCCTTGGGTTATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039172-'36-33,'36-32,37-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(20.1=100)
A:
PF0056613=RabGAP-TBC=FE(23.0=100)
C2:
PF0056613=RabGAP-TBC=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGAGGAACAAGCATTCA
R:
ATAACCCAAGGGCGACGTTAA
Band lengths:
162-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]