DreEX6087121 @ danRer10
Exon Skipping
Gene
ENSDARG00000098967 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr10:8737543-8739290:-
Coord C1 exon
chr10:8739165-8739290
Coord A exon
chr10:8737685-8737828
Coord C2 exon
chr10:8737543-8737584
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTCTCTGTATTGTAGGAA
3' ss Score
11.07
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
ATGCCAGAAGAGCAGGCGTTCAGCGTGCTGGTCAAGATCATGTTTGAATACGGTCTCAGGGAGCTCTTTAAGCAGAACTTTGAAGACCTGCACTGCAAGTTCTTCCAGCTGGAGAGACTCATGCAG
Seq A exon
GAATGCATTCCAGACCTGTACACACACTTCCTGAACTTGGGTTTGGAGGCGCACATGTACGCCTCCCAGTGGTTCCTCACACTCTTCACAGCCAAATTCCCTCTTTACATGGTCTTTCACATCATAGATCTTCTGCTGTGTGAG
Seq C2 exon
GGCATCAGTGTCATTTTTAATGTGGCTCTTTCATTATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098967-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(20.1=100)
A:
PF0056613=RabGAP-TBC=FE(23.0=100)
C2:
PF0056613=RabGAP-TBC=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAGAGCAGGCGTTCAG
R:
TGAAAGAGCCACATTAAAAATGACAC
Band lengths:
156-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]