RnoEX0073404 @ rn6
Exon Skipping
Gene
ENSRNOG00000009402 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:RGD Symbol;Acc:1304691]
Coordinates
chr3:21789597-21791743:+
Coord C1 exon
chr3:21789597-21789722
Coord A exon
chr3:21790183-21790326
Coord C2 exon
chr3:21791702-21791743
Length
144 bp
Sequences
Splice sites
3' ss Seq
TAATAAGTTTGATGTTTCAGGAA
3' ss Score
5.78
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
ATGCCTGAAGAACAGGCATTCAGTGTTCTGGTCAAGATCATGTTTGACTATGGTCTCAGGGAACTTTTCAAGCAAAATTTTGAAGATCTACATTGCAAGTTCTACCAGCTGGAGCGCCTCATGCAG
Seq A exon
GAATATATTCCTGATCTGTACAACCACTTCCTGGATATCAGCCTTGAAGCACACATGTATGCCTCCCAGTGGTTCCTTACACTGTTCACTGCAAAATTCCCTCTCTACATGGTCTTCCATATCATCGACCTGCTCTTATGTGAG
Seq C2 exon
GGAATAAGTGTCATCTTTAATGTTGCCCTTGGATTACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009402_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(20.1=100)
A:
PF0056613=RabGAP-TBC=FE(23.0=100)
C2:
PF0056613=RabGAP-TBC=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGAACAGGCATTCAGTGT
R:
CTTTAGTAATCCAAGGGCAACATT
Band lengths:
164-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]