BtaEX6046055 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014391 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr11:94511697-94513043:+
Coord C1 exon
chr11:94511697-94511892
Coord A exon
chr11:94512052-94512191
Coord C2 exon
chr11:94512858-94513043
Length
140 bp
Sequences
Splice sites
3' ss Seq
GGGCCGCGCGCCCCCTTCAGGTT
3' ss Score
7.88
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCGTGACCTGCGAGACGGAGGTGGACGAGTGCGCCTCGGCGCCCTGCCTGCACGGGGGCTCGTGCCTGGACGGCGTGGGCTCATACCGCTGCGTGTGCGCGCCGGGCTACGGGGGCGCCAGCTGCCAGCTGGACCTGGACGAGTGCCAGAGCCAGCCGTGCGCACACGGGGGCGTGTGCCGCGACCTGGTCAACGG
Seq A exon
GTTCCGGTGCGACTGCGCGGACACGGGCTACGAGGGCGAGCGCTGCGAGCTGGAGGTTCTGGAGTGCGCGTCGGCGCCCTGCGCGAACAACGCGTCCTGCCTCGAGGGCCTCGGGAGCTTCCGCTGCCTCTGCTGGCCAG
Seq C2 exon
GCTACAGTGGCGAGCGGTGTGAGGTGGATGAGGACGAATGTGCGGTGGGCCCCTGCCAGCATGGGGGCCAGTGCCTGCAGCGCTCGGATCCAACCCTCTATGGGGGCATCCAGGCCACTTTCCCAGATGACTTCAGCTTTCGCCAGGCTGCTGGCTTCGTGTGCCGCTGCCCTCCGGGCTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014391-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=3.0),PF0000822=EGF=WD(100=47.0),PF0000822=EGF=PU(53.1=25.8)
A:
PF0000822=EGF=PD(43.8=29.2),PF0000822=EGF=PU(80.6=52.1)
C2:
PF0000822=EGF=PD(16.1=7.9),PF126612=hEGF=PU(69.2=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATACCGCTGCGTGTGC
R:
GTCATCTGGGAAAGTGGCCTG
Band lengths:
248-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]